Protein Data Bank Correlator

After an experiment on a Fida 1, you can use the PDB correlator as an orthogonal method of validating the state of your protein. If the Fida 1 results and the PDB correlator agrees, you then you have the oligomeric state of your protein confirmed. If it differs you know that your protein in solution behave differently compared to the crystal structure. Read more here.

By using Alphafold you can generate a PDB file based on the protein sequence. This allows you to use our PDB correlator - read more here.

The PDB correlator extracts the atomic coordinates from a PDB-file and and based on our algorithms it predicts the hydrodynamic radius, radius of gyration, shape of the protein, number of atoms and molecular weight. It can be used as a quality control tool e.g. to confirm that the sample is indeed what is expected, to determine oligomeric state, etc. Keep reading...